rs48197553 SNP Detail

Summary

• ID
  rs48197553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24359782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTGGT CCATAGCTGT
  CACTCGCACA GTGACTTTGG GTGTGGCATT TCCTGGTTCT TGGTCTCTGT TGCAGGGTCA
  TCTCCATCCT CCGGCCTCCT GGTCTCGTCT GTGATAACTA TGAGGTGTTA CTGAGACTCT
  GGTAAATCCA AAATGTCAGA CATAGGACTT TCAGGCCTCT CTCTGAGTTG TCACTGAGAA
  Y
  GTTTACATTT CTGCCTGAGG GAGGCTGTTA CCATCCCTCC AGATGTATTT GTGTGTAATC
  TGAGCATTTG GGAGACTCGT GTCCAAGGTC TGTCTGGATT AGAGAGCAAG GAGAAGGCCC
  GATGGGCAGA CAGAATGAGC ATAAGCCTGC TCTGGACAGC TTAGTTTAGT TCTATTTAAA
  AGTTAACTTA GTTATTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60982573	NES16150669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	C	T	C		T
ss322120865	CHEV_7_25445376	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48197553					SNP	T	T	T	T	T	T	C	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982573	NES16150669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24359782 () rs orientation: forward

Symbol	Name	Function Class
Gm4598	predicted gene 4598	937 bp upstream
Rr643537	regulatory region 643537	1100 bp distal
Rr643538	regulatory region 643538	1179 bp proximal