rs48198000 SNP Detail

Summary

• ID
  rs48198000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:56499472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTCTTT GATGACTGAG
  TTTGGGGTGA GGGGAAAGCC TGTATCATCA TAGTTGCAGA AACCAGGCCC ATTCTATCTG
  CTCCAGGAGA ACATATTGTT TTCTGATTTG CAGGTTCCTA CCCTTGATCA TGTACTTCTA
  GGAAGATCCA CTTTGCAGAT GATAAGGGAA TGGCTCAGGG AGCGGAGAGC ATTCAGTGGC
  Y
  CTTCCTGAGA AAGACCTCTG CCCTCCTGCT ACTGGTGACA GCGGGGTTAG ACCACTAAAG
  GAAGGTGTTG CTTACTCACC TGCCTTTGTC CTGGAGGCCA GAGACAAGGT CAGCAGTAGC
  AGGAGGATCT TCATCTTCCC CGGAAGGCCG CCTAGGTCCC AGCGTCAAGA GTGTTGTCCT
  TGCTCTCTTT TAACCTCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52723311	NES15569345	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	C		C
ss324645047	CHEV_14_56880852	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48198000					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723311	NES15569345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:56499472 () rs orientation: forward

Symbol	Name	Function Class
Gzmb	granzyme B	within coordinates
Rr295614	regulatory region 295614	154 bp proximal
Tssr128924	transcription start site region 128924	157 bp downstream
Tssr128925	transcription start site region 128925	202 bp downstream
Tssr128926	transcription start site region 128926	218 bp downstream