rs48198355 SNP Detail

Summary

• ID
  rs48198355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59378184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TGCTACTTTA CATCTGAATC
  Y
  TGCTCGGTAG GACAAGGTTG AGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146572013	ENSMUSSNP6410097	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325874061	CHEV_19_59464242	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48198355					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59378184 () rs orientation: forward

Symbol	Name	Function Class
Gm33756	predicted gene, 33756	within coordinates
Rr370546	regulatory region 370546	279 bp downstream
Rr550623	regulatory region 550623	1055 bp distal
Rr550624	regulatory region 550624	27 bp distal
Rr550625	regulatory region 550625	341 bp distal