rs48198555 SNP Detail

Summary

• ID
  rs48198555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:74873678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTTTGG TTTTTGGATT
  GTTTGTTTTT TTAATACCTC CCACATGCCA AGGAAGTGAA TGCAAAGAAG GAGCCCCTCT
  TCCTAGGCAT GGGGTCACCT CCCGACTCGG CAAGATGGGG TATGGGCTGC CCTTCCTCCA
  CTGTGCTGCC TACAGCGTGA ATGGCCTCTG CCTAACAATG GTGGTAGGGA TGGAGACCCA
  R
  ATATGTTTTA AGTCACAGGT GCATTTTGAG AACTTGTATG GCTTCCTGGG TCTTGTTAAA
  AGACAAATAT AACAATTTTT GCCCTAATTG ACTCTGTGAA TGTAGAATTG GGCAACACTT
  CATCCTGTGA AATAAACTTG AGTGTTGTCT TGTTTTGCTT GGCTCCGTTT GAGTCTCTTG
  GTGTGACAGG CTCTCAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss52365269	NES15274469	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs48198555					SNP	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52365269	NES15274469	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:74873678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1716	CpG island 1716	400 bp distal
Rab36	RAB36, member RAS oncogene family	within coordinates
Rr433913	regulatory region 433913	747 bp distal
Rr433914	regulatory region 433914	within coordinates
Tssr94068	transcription start site region 94068	746 bp downstream
Tssr94069	transcription start site region 94069	558 bp downstream
Tssr94070	transcription start site region 94070	514 bp downstream