rs48198727 SNP Detail

Summary

• ID
  rs48198727
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71065623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACGGGAA TGAACTTAGT
  TTGTCTTACT ATAAAAGTTT CCAAGCAGAA GATGAAGTCA TCCTGGTTCT TCACTGTAAT
  TCCAGTTCCA GGGGATCCGA CACCAGCACA TAGACATACA TGCAAGCAAG ACACCAATAC
  ACATGAAACA AAACTAAATA ACAATTGACT GATTTTATTA CCACTACATT GCCTTTAGCC
  W
  AATAGTGATG ATTTTGCTCC ATCTTATACC AGACTGGTAA GTGTTCATAC TCTGTGAGTT
  CCAGGCCAGC CTGGTCTACG GAGCGAGTTC CAGGATAGCC AGGGCTACAC AGAGAAACAA
  TATTTAAAGA AAAGGAAAAA AAAATTTCTT TCCAGACATT AAATGGGAAA AATCTCAGGT
  TTGGTACATA GGTGGTAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60632744	NES16282138	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48198727					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632744	NES16282138	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71065623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20477	CpG island 20477	1093 bp distal
Gm45546	predicted gene 45546	155 bp downstream
Rr400904	regulatory region 400904	1828 bp downstream
Rr400905	regulatory region 400905	789 bp downstream
Rr664837	regulatory region 664837	587 bp distal
Rr664839	regulatory region 664839	1343 bp distal
Rr664840	regulatory region 664840	813 bp distal