rs48198767 SNP Detail

Summary

• ID
  rs48198767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110767960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGC CAGGACCTGA AAATTAGGTC
  Y
  TCTGCAAACA CAGCAAGTAC TATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136960311	ENSMUSSNP1290593	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323194882	CHEV_9_110841396	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48198767					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110767960 () rs orientation: forward

Symbol	Name	Function Class
Cripto	cripto, EGF-CFC family member	716 bp downstream
Rr192786	regulatory region 192786	1160 bp distal
Rr192787	regulatory region 192787	160 bp distal
Rr202610	regulatory region 202610	1193 bp distal
Rr207413	regulatory region 207413	960 bp distal