rs48199176 SNP Detail

Summary

• ID
  rs48199176
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGCAGA AGGCAGAGGG
  CAGAGGGCAG AGGCAGAGGC TGACAGATCT CTATGAGTTT GTGGCTAACC TGAGCTACAC
  AGTTCTAGGC TAAACTGGCC TACAAAGTGA GATCCCGTTT CAGAAGCAGA ATATAGGGAC
  ATCCATGAGT GAAGCTGGTC TCCATGAGTC TGGTACCCAC ATACTGAGTA CCACACACCC
  K
  AAATGATACC CCTTGGCTCA TAAAGGACAG CTGACCGGGG CGTTTCTGCT TGCTATTGAG
  GATACGGTAA AACATAGAGC CCGTGTGAGG TTACACCTCC AAAGGACAGT TTGATTTGGG
  GCTTTATTAA TCAGAGGTCT ATCTGTCCCG CAGGAATGAG GATGTAGTTC GGTTGGTAGA
  GTGCTTACGC AGCATGCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148399970	ENSMUSSNP7003514	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48199176					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	444 bp proximal
Gm71929	predicted gene, 71929	1282 bp downstream
Pnma8b	PNMA family member 8B	672 bp upstream
Rr368243	regulatory region 368243	446 bp upstream
Rr642821	regulatory region 642821	641 bp distal
Rr642822	regulatory region 642822	182 bp proximal
Rr642823	regulatory region 642823	595 bp proximal
Rr642824	regulatory region 642824	1633 bp proximal
Tssr64660	transcription start site region 64660	635 bp upstream
Tssr64661	transcription start site region 64661	1684 bp upstream
Tssr70792	transcription start site region 70792	1639 bp downstream