rs48200041 SNP Detail

Summary

• ID
  rs48200041
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88204910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTACA GAGTCACTTG
  TACCGCTAAT CAATTAGCTC GAACTTCCAT GCCAGGCATT TTAAAAAACC AGGCTGCACT
  GTGTCTCCAG GCATTTCTTT CAGAGAAATT AAATTGGAAA TCAGCAACTC AGGGATTCAA
  GGTCCCTAGG AGCAAGGGGG ACAAATGCAG CATTGCAAAT TCTAGGCCCA CTGTTCTGGC
  G
  CAGTGCCAAC AGGAAGGGAG GGCTTCGTAC CCTGGGGCGT CTCGTAGGTT AACGTCCTCA
  TCTCCACCAA CGGGTCGTCC TCAAAGGGCT GGTTGTACTG CGGGGAAGGG AGAGCTGGTC
  AGACTCCGGG GCGCTGGATC CCCGCCCACC GCGCCCTGCC CGCCTCGGCC GCCGTCCCAG
  CCTACCTTCG CTATCAGCCG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss144900254	ENSMUSSNP1939995	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48200041					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88204910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	within coordinates
Cpgi541	CpG island 541	959 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr29783	regulatory region 29783	within coordinates
Tssr12873	transcription start site region 12873	76 bp downstream
Tssr12874	transcription start site region 12874	282 bp downstream
Tssr12875	transcription start site region 12875	322 bp downstream