rs48200381 SNP Detail

Summary

• ID
  rs48200381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81491422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCATGTA TTCCAGGCTG
  GCCTCTCAGT CTCTATGTTG ATGAGGATAG CCTTGGACTC CTAAGCTTCT CACCTCTACT
  TCCCATACTG CAGGTATGTG CCACTGCACC TGCCTTTGCC CTGTAAGAGT CTCTTGTGTC
  ACTACCCATG TACTATCTAT GTGTCCCCAG AACCGGGGAT AGTGGTGGCC TCAACAGTGA
  R
  CTCTCTTACC TTTCCCCCAC TGAGTTCTCA AGAGTGATCA AAGTCCTTTA CTTACATTAA
  CTCACATAAT CGATATCTGA TTAATCTCGG CACTTGATAA ACGCCAAGTC CAGAAGGCTA
  CAGGATGAGT AAGAAGCGGT TGTTGAATAT GTGCTTATGC AAAAGGATCA CACCCAGGGG
  GTGTGTGCAC ACAAGGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63200471	NES17462987	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48200381					SNP	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200471	NES17462987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81491422 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	283 bp proximal
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	306 bp proximal
Gm30288	predicted gene, 30288	within coordinates