rs48201408 SNP Detail

Summary

• ID
  rs48201408
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGGCCC CGGCCTACTT
  TCTGTTTCAT ACTCTCCTCT CCGGCCACCT GCCCACACTA TGATGGCAGA GCTCTGCGGT
  TAAAATAGAG CTCCTGTAGC CTGTTAAGCC AGACCAAAGT TCATCCTGGG AACCAATGAG
  TTTACTCGTC ACTTACAGAT GGATGGTGAC CCTAAAGCAG TACACATAGG AAGATCAGCA
  C
  CCAGCATGGA CAATGACTCC CTCATGGCCG TGTGCTGTAA ATATTATCTT GGGGGATTTT
  ACTCTACTTA GACCATACGG TTCCCAAATA AAAGACACAA ATCTTTTAAG GCATTAGAGC
  TGGACAGGTA TCAAGCCTCT GTGTTTGTCT ATTCCCACTA TTACCTGCCA TGTTACACCT
  GGACTGTTCT CATGGCCATG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149056739	ENSMUSSNP1569680	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48201408					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975800 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1145 bp downstream
Rr616963	regulatory region 616963	417 bp distal
Rr616964	regulatory region 616964	within coordinates