rs48201995 SNP Detail

Summary

• ID
  rs48201995
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:34975334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAAAAG GAGGAAATGA
  GGGAGGGGTG ACAGAAGATG CCTCCCAATG CAGAGTACTA CTGCCCCTAA AATGTTCTCT
  GGCATTTGGA CGCATGAGGA AGGAGACTGA GGTGCAAAAC CAGGGATCTT ACCCTTGTGC
  CCTCCTGGCT CTCTGTCACT GTGAATCTCT GTCCCTTTGC CTGTGGAAGA GCTCCTAGCA
  W
  GCCCAATTTG TGTCTGACAA ATAGCCCATA ACTTATGGCA TGACTGGGAT GGAGCAGGAT
  ACAGTTTCTG GGGACCAGGG TTACATCTGT GTGTGTGGAC AAGGGGAAAG ACTGATTCAT
  TACAATTCGT AACAAGGATA GTTACAGGCA GAAGAATAAC TGTGGATGGA ATAATCGTGA
  AATAGAGGGT TCTCACATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993510	NES16129148	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48201995					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993510	NES16129148	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34975334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18867	CpG island 18867	683 bp distal
Cpgi18868	CpG island 18868	236 bp distal
Gm73037	predicted gene, 73037	within coordinates
Gpatch1	G patch domain containing 1	635 bp downstream
Rr645354	regulatory region 645354	1595 bp proximal
Tssr72028	transcription start site region 72028	365 bp upstream
Tssr72029	transcription start site region 72029	349 bp upstream
Wdr88	WD repeat domain 88	mRNA-UTR