rs48203056 SNP Detail

Summary

• ID
  rs48203056
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10610672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA AAACTGTTTT TTGTTTTTTT
  W
  CAAGACAGGG TTTCTCTGTA TAGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146607079	ENSMUSSNP656353	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325524297	CHEV_18_10610670	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48203056					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10610672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	24 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	320 bp upstream
Rr533778	regulatory region 533778	574 bp distal
Rr533779	regulatory region 533779	896 bp distal
Rr533780	regulatory region 533780	within coordinates
Rr533781	regulatory region 533781	536 bp distal
Rr533782	regulatory region 533782	230 bp distal
Tssr152429	transcription start site region 152429	556 bp upstream
Tssr152430	transcription start site region 152430	528 bp upstream
Tssr152431	transcription start site region 152431	384 bp upstream
Tssr152432	transcription start site region 152432	360 bp upstream
Tssr152433	transcription start site region 152433	309 bp upstream