rs48203180 SNP Detail

Summary

• ID
  rs48203180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172033510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG GTGGGTGGGT GGATGCCTAG
  Y
  GCAGGGGTGT TGTGATTTGG TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007337	PARCsnp_1.17747	PARC_SEQ	INBRED	f	SNP		T	C
ss120010237	PARCsnp_1.07386	PARC_SEQ	INBRED	f	SNP		T	C
ss146183809	ENSMUSSNP7172399	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320123195	CHEV_1_174136074	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs48203180					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172033510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	265 bp proximal
Gm17224	predicted gene 17224	1084 bp upstream
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr396578	regulatory region 396578	1297 bp upstream
Rr423483	regulatory region 423483	1000 bp distal
Rr423484	regulatory region 423484	467 bp distal
Rr423485	regulatory region 423485	within coordinates
Rr423486	regulatory region 423486	851 bp proximal
Tssr294	transcription start site region 294	685 bp downstream
Tssr295	transcription start site region 295	737 bp downstream
Tssr296	transcription start site region 296	813 bp downstream
Tssr297	transcription start site region 297	844 bp downstream
Tssr15164	transcription start site region 15164	711 bp downstream
Tssr15165	transcription start site region 15165	741 bp downstream
Tssr15166	transcription start site region 15166	832 bp downstream
Tssr15167	transcription start site region 15167	1758 bp downstream