rs48203584 SNP Detail

Summary

• ID
  rs48203584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:48164374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCGATG CGACGGCTTT
  TGCGTTTTCT TTGCTTTTTC CACAGCCAGT GCCCAAATAT ACCGACTTAC ACCTCAATTC
  ACAGACAATA CTTTCTTGAG AGCTCTTATT TTGAGGCAGA TCTGCCAGTT CTTTCAGTGG
  GACAAAAAAC ACATCCAGTG TTGCTTTCAG AGCCTCAATA GCCGCGTTCA GCAGCTCTCC
  R
  TGATTCACAG TGGGGCTGAA GCCACCAACT GCTACTAACT TCCACGCCAC CGTCTTATAC
  AGTCTATTGA AGAAAGGTTG CTTCTGTTTT ATGTCTTCAT TGGTTAACTT CCGACAAGCA
  AACTTGACAG AACTCTCACT GGCCTGGGAG GTACTTTTCG AAGGCAACTG TGAAGTGCTA
  CTCTGAGAAC CACTCTTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60606881	NES16304496	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48203584					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60606881	NES16304496	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:48164374 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2aip	CDKN2A interacting protein	within coordinates
Cpgi20333	CpG island 20333	1723 bp proximal
E030037K01Rik	RIKEN cDNA E030037K01 gene	1927 bp upstream
Rr663262	regulatory region 663262	1586 bp proximal
Rr663263	regulatory region 663263	1942 bp proximal
Tssr81246	transcription start site region 81246	715 bp upstream
Tssr81247	transcription start site region 81247	317 bp downstream