rs48205819 SNP Detail

Summary

• ID
  rs48205819
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176719033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGTCAG GCTTCTTTAA
  ACCTAGAGAA ATTATTTGCA TAGAGATTTC TTTAGAGAAA ATAACCAAAT GGTAAAAGGT
  ATATGAAAGG ACACTTACCA TTAACTGTCA GAGGGATGTA ACAAAACTCA TGTGAGATAC
  CACACTACAT CTCATAACCA ATTGGTAAAA GGCATATGAA AGGACACTTA CCATTAACTG
  K
  CAGAGGGACA TGGCCAAACT CATGTGAGAA TCCATACCAC ATCTCATAAA CATAGCTCTA
  ATTTAAAAGA CAATAATAAT AGGCTGGTGA GGTGGCTCAG TAGTCAGAAA CACTTGTCAT
  GCCAGCCTGG GGGTCTGAGC CCATGCCTGG AACCCATGGT GGAAGGAGAG AATAGACTCC
  CGAAAGTTGT CCTCTGATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60349113	NES15853491	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	T		G
ss320158161	CHEV_1_178821598	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48205819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349113	NES15853491	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176719033 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	1237 bp downstream
Rr423928	regulatory region 423928	575 bp distal
Sdccag8	serologically defined colon cancer antigen 8	within coordinates