rs48207393 SNP Detail

Summary

• ID
  rs48207393
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3768333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGAGAG CGACTCAAAG
  GTAGAGCACC TGCTTAGAAT CCTGCTTTGA GGGTCTGGGC ACGGCTCAGG TGTGGAAAGC
  CTACCTAGCA TTCGAAGTCC TGGGTTCAGT CACCAGAGAC CTGAGGGTCC AGGACTGGAC
  TACCAAGAAG CGGTGTGGCT ATGATTAGGG ATGAAGGTCG GGGACCAGGG GGTTGTGTTC
  G
  GCTCTCACCA CGCTCTTGCA GTTCTTTCAG GATGCTCTCC TGCTCCATCA ACTTTGCTTG
  TATGTCCTTA AACTCCGCCA GTGTGGTTTG CAACTGCGCT TTTGTCACGG AGCCTATATG
  GGGATGGGGC AAAAACCAGT CTTGCCCCCA CTTGCCTCTC CCAAACCACC TGCCCCATTT
  CCCAGCCCCT CAACTTTCAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148548804	ENSMUSSNP2326378	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48207393					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3768333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clec4g	C-type lectin domain family 4, member g			Intron
				Noncoding-Transcript-Variant
Gm16553	predicted gene 16553			within coordinates
Rr400747	regulatory region 400747			236 bp upstream
Rr658970	regulatory region 658970			266 bp proximal
Rr658971	regulatory region 658971			387 bp proximal
Tssr80223	transcription start site region 80223			775 bp upstream
Tssr80224	transcription start site region 80224			751 bp upstream