rs48208533 SNP Detail

Summary

• ID
  rs48208533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104697515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGCTTG GCCTGAGTCC
  CCAATTATTC TGGCCTAAGC AGAGCCTAGA TGCAAAGTCT TCGGAGCTGG AGGCTCTAAC
  ACAGCCACGA AGTTCCGGCC TCTGCCTCCC ACCATCAGAT GCTCAGCCGC CTTGCTGCTG
  TGGGACAGCC GGGGCTCACG CATGGGGATG TGACTAGTGT TTAAGTGTCC TAGGGATCAC
  R
  CTCCATCCAC ACTGCCCACC CTGGCTTGGG GCTGTCCCCG CCAGCCTGTG TACAGCTAGA
  CTGGTTGAAT TAATGGGAGT AGGTGGGGAA GTTGGAGGAA ATCCTGTGGG TTACCTGGAT
  ATACCTCTCA GACCTCATTT TTGAAGGAGA TATGCAGCAT AGCGAATGCC TTCTTCCCAG
  TCTTTCGGGG GTACCAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60431844	NES15936378	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs48208533					SNP	G	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431844	NES15936378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104697515 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	502 bp distal
Gm66976	predicted gene, 66976	within coordinates
Rhoc	ras homolog family member C	within coordinates
Rr77009	regulatory region 77009	within coordinates
Tssr31056	transcription start site region 31056	1604 bp downstream
Tssr31057	transcription start site region 31057	1358 bp downstream
Tssr31058	transcription start site region 31058	1344 bp downstream
Tssr31059	transcription start site region 31059	1153 bp downstream
Tssr34890	transcription start site region 34890	1846 bp downstream