rs48208923 SNP Detail

Summary

• ID
  rs48208923
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96803476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGCATC TCATGTACAG
  GACTATTCCA GCGTTCTGCA TAATCCTGGA AAGTGAGTGT AATGCTCTAT TAACACGGTG
  CTTGCCACTT CTTCAACCAC CTAAATCCCT TATTACTCAC TGGTAAACAA CTTATATGCA
  AATGTTCCTT TAAGTTAAGT TTCAAGAGTA ACTCCTTGTA GTTATGTGAG CCAAGGAGGA
  R
  CAGAATAAAT AAAGCACAAA GCAGACATGA GACTATTCCC ACTTTTTAGT TAAACAGAAA
  GCCCACGAGC ATCCTCTTCA CCACCACATG CCTAATAAAG GCAACACCAA AGAACCTTCT
  TCTCGAGCAC CTTGCCATAA ATCCTGCTTT TCATTTCAGT CTCTAGAATA AGGCAGAATG
  TCACTAGCAC AATGTATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61944139	NES17104353	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs48208923					SNP	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61944139	NES17104353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96803476 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	75 bp distal
Rr281795	regulatory region 281795	124 bp proximal
Rr285480	regulatory region 285480	1899 bp distal
Rr285481	regulatory region 285481	1276 bp distal
Tssr123569	transcription start site region 123569	241 bp upstream