rs48209097 SNP Detail

Summary

• ID
  rs48209097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCAAATT CCAAACAATA
  ACTTTTGACT TCTCCCTCAC AGCGTCTCCA AGTCAACCCA GCGCGTCATT CTTAAATCCT
  ATCCTAGCTT TTTACTACTG TATCTGGCCC CTAGTGCTTG TTTTCATCAA CTAAAATCTG
  CTGTTATTAA ATTTGGGGAA TGCATCATTG GCCAGTGTTT CTTCCAGGCT ACATGCAGAG
  K
  GGCGCCTAGT GAGACAGATC CTAATGGCAG GCTGTTTTTT AGCTGTTACA CACACTCGGG
  TCTACAAGCC GGAAGAGAAT GAACTAGCGA CGCTCCTGCT GTTTCCCTAT TAGGGCTCAT
  CAATTCATCA ATGTAAATTA AAAAAAAAAA AGATTAATAA AGAAATTCAT AAACTAAAAA
  GTCTTCTAAG AGAAAAATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52423989	NES15399380	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48209097					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423989	NES15399380	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650904 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1799 bp upstream
Cpgi4596	CpG island 4596	328 bp distal
Cpgi4597	CpG island 4597	520 bp proximal
Gm23296	predicted gene, 23296	364 bp downstream
Gm24859	predicted gene, 24859	227 bp downstream
Gm35239	predicted gene, 35239	716 bp upstream
Gm59577	predicted gene, 59577	304 bp downstream
Rr369517	regulatory region 369517	563 bp upstream
Rr403283	regulatory region 403283	167 bp downstream
Rr403284	regulatory region 403284	295 bp upstream
Rr466025	regulatory region 466025	1814 bp distal
Rr466026	regulatory region 466026	1238 bp distal
Rr466027	regulatory region 466027	233 bp proximal
Rr466028	regulatory region 466028	762 bp proximal
Tssr116285	transcription start site region 116285	1773 bp upstream
Tssr116286	transcription start site region 116286	1750 bp upstream