rs48210369 SNP Detail

Summary

• ID
  rs48210369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45014892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAGTATG AGACATCAGA
  TATTACCATA TGGGTCTCTA GAGGCAATGA GATGCCAGAA ATATCCAGCT TTGGGGGAGA
  GGAGACTCTG CAAGTCTAGC ACCTGAGATG ATAGAGCAGA TGATAAGTGC TCGTTAAAGC
  CATGGGAGAT GTGAAGTTGA GGCCACCAAG ACATGAAGAT GGGAGTGGAA TGCAGAGCCA
  R
  GGTCCAGACT TTTGAATCTA CCTAGGGGTG AAGAAACTTA GAGCCTGACT GTTTGGTGGG
  AGTGTAAGCC TGGGTGGGTG GTCTGATGGA CAGGACACTC ACCACTGTCA GAGATTCTGG
  GTCCCTGAGA TGAGTGTTTG TTCAGGTGGA GGTTATAAGA TGGGGGTGAG ACACTTAGAT
  CTCCAAGGGG GAGTGAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003691	NES16117373	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48210369					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003691	NES16117373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45014892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	575 bp proximal
Gm71276	predicted gene, 71276	1961 bp upstream
Mtag2	metastasis associated gene 2	693 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	1475 bp upstream
Rr646419	regulatory region 646419	228 bp proximal
Rr646420	regulatory region 646420	550 bp proximal
Rr646421	regulatory region 646421	1236 bp proximal
Tssr72376	transcription start site region 72376	1300 bp downstream