rs48211039 SNP Detail

Summary

• ID
  rs48211039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35221651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTGTTC TCCAACATGA
  AGCACAATGG ATTCTCTTGG GCAAATAGAC CATGAAATTT TAAAATTTGA GACCAGGTGC
  TGGGCCTAGG GACCCTGGCT CATCCTGGGT GTTCTCTTGG GCACTGGAGA ACCAGATGAT
  TCTCTGTATT TTTTTTTCTG GAGGTTCCCA GGGCCCTGCT CGCCACTGGA GCCTCTGCCC
  Y
  GTTCTGAGTC AGTCCTTTCC CTCTCAAATT AAAACAGCTA ATTTTAGACA CTTCCTGATT
  ACTCCTAGCT GGGTCTCATT AGCAGATTGA AAACGGGTTG GAGCCTCAGC TGGAGAAGAA
  ACAACTTTCA TTGGTCCTGG TCTGTTTTCC ATCTCCACAT TGCTGTTGAT GTTGGCTGCC
  TTGGAACAAA GCAAAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61379256	NES16759004	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48211039					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379256	NES16759004	PERLEGEN	MM_PANEL	f	SNP	C/T