rs48211831 SNP Detail

Summary

• ID
  rs48211831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171487570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCT GATTCTCCCG TTTCCATCCC
  Y
  ACCTGCCCCA AATCCACCCA CAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120001865	PARCsnp_1.15010	PARC_SEQ	INBRED	f	SNP			C	T
ss120004163	PARCsnp_1.04350	PARC_SEQ	INBRED	f	SNP			C	T
ss146171839	ENSMUSSNP5449230	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320120226	CHEV_1_173590133	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48211831					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171487570 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	291 bp downstream
Rr423376	regulatory region 423376	1036 bp distal
Rr423377	regulatory region 423377	1074 bp distal