rs48212286 SNP Detail

Summary

• ID
  rs48212286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTATTAT CTGCTGTCTT
  CCTCCACTAC AGTGTCAGTT TCAGAGGGTC CCACTATGTA GCCTGGGCTG TCATGGAACT
  TGCTATGTAG TCCAGGCTAG CCTCAAACTT GCTGCCATCT TCCTTCTGTT TCCCAGGTGC
  AAAGATTACA GGAATACATC ACCACACCCA TCAATAGCAA AGATATTTGT CTGTCTTGTT
  Y
  ATGGCTGTCT GGCACACGCA TGAATCCACG CTGAATACAC AGTTGAAGGG GTGATGTGGG
  CATGTCTATG TCATCAGTGG GGGTTCAATA AGCAGGAAGG GGGGATATCA GAGGGGAAGA
  ATCAGGATGA CCAAATGGAG CCCCTGCTGG TCTACAACTG CTCTTAAGTT GTATAAGTGA
  ATCTATAGTG ACCAGAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148696841	ENSMUSSNP4264962	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss322138587	CHEV_7_31821028	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48212286					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735434 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	834 bp upstream
Gm71772	predicted gene, 71772	980 bp upstream
Rr644978	regulatory region 644978	1651 bp distal
Rr644979	regulatory region 644979	930 bp distal
Rr644980	regulatory region 644980	985 bp distal
Rr644981	regulatory region 644981	890 bp proximal
Rr644982	regulatory region 644982	991 bp proximal
Tssr2191	transcription start site region 2191	524 bp upstream
Tssr65830	transcription start site region 65830	741 bp downstream
Tssr65831	transcription start site region 65831	979 bp upstream
Tssr65832	transcription start site region 65832	1399 bp upstream
Tssr65833	transcription start site region 65833	1796 bp upstream
Tssr65834	transcription start site region 65834	1850 bp upstream
Tssr71891	transcription start site region 71891	448 bp downstream
Tssr71892	transcription start site region 71892	1009 bp downstream
Tssr71893	transcription start site region 71893	1851 bp downstream
Tssr71894	transcription start site region 71894	1872 bp downstream
Tssr71895	transcription start site region 71895	1885 bp downstream
Tssr71896	transcription start site region 71896	1915 bp downstream