rs48212374 SNP Detail

Summary

• ID
  rs48212374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94796563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTATTTT GAGCAGTTAC
  TCTGATGCAC CATCATGCAT GAAATGGTTG ATTTGCTAAC TCCTGTGTGC CACATAATTC
  CATGGATAAT CTGACACCCG AATTCAGCAC GAACAGGGAA TTTGATAGAT AGAGATTGCC
  TTCCCAAGAC CACAAGATCT AGAGTTTGCT AGGGGCAGCC ATCCTATCAG GGACATGAAC
  Y
  CGCTGCACCT TGCTCTGGCC TTGGTGCTGA AACCAGAACC TGCTCAGAAT GGCATCTACG
  GAAACTTTGC CATGTTGGAG GAGAGCCTGA CAGGATATAA GTGCCCTCTC GTGGATCACT
  CTTAGGGAGC TGGACCCAGC TGATACCCTA GGATACCCTT AGGGCACACG GTGGGCATTT
  TTTTGCCTGG AGCCAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60512652	NES16528909	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48212374					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60512652	NES16528909	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94796563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8509	CpG island 8509	1409 bp proximal
Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6	within coordinates
Rr520239	regulatory region 520239	within coordinates
Rr520240	regulatory region 520240	98 bp proximal
Rr520241	regulatory region 520241	1014 bp proximal
Rr520242	regulatory region 520242	1941 bp proximal
Tssr142241	transcription start site region 142241	739 bp upstream
Tssr142242	transcription start site region 142242	638 bp upstream
Tssr142243	transcription start site region 142243	564 bp upstream
Tssr142244	transcription start site region 142244	551 bp upstream
Tssr142245	transcription start site region 142245	1670 bp downstream
Tssr142246	transcription start site region 142246	1766 bp downstream
Tssr142247	transcription start site region 142247	1872 bp downstream
Tssr142248	transcription start site region 142248	1903 bp downstream
Tssr142249	transcription start site region 142249	1949 bp downstream