rs48212445 SNP Detail

Summary

• ID
  rs48212445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97148289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTGGGAC AGATGGATGG
  TCCTTTGGTC TCTCCGCGTG GTATTTTCTA TTGGTATTTT TGACCGTTTG ATGATGATGA
  CTCCAGTGGA TAGTAGGAAG TGGCTTCAGG GTATGATCTG ATTTTGAATC TGGTGGGCTG
  AGATGGGCGT GGCCGTGGTT CACCTTCCTG GCTTTGGAAG GCTCTCCCGT CTGGAGGGTG
  Y
  GATTGAGATG AGGTCTCGGG TTCTAGCTCT GTGGTTTCCA ATTTCTCAGG TTGTATTTTA
  AAATCTTGAA GAGTTAGAGA TCAAGGGCAA GGCATGATTA TAGCAGTGGT GTATTCGATT
  GCTCTAGGGG AGCAGAACTC ATACAGTGAA TCTGTATATA AAGAGGGGAC TTACCAGCTA
  GGGTTGGACT ACTGTCTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss63609781	NES17042000	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T		C
ss325076423	CHEV_15_97080839	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48212445					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63609781	NES17042000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97148289 () rs orientation: forward

Symbol	Name	Function Class
Gm57814	predicted gene, 57814	1246 bp upstream
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr305670	regulatory region 305670	889 bp distal
Rr308785	regulatory region 308785	489 bp distal
Rr308786	regulatory region 308786	1112 bp proximal
Rr312356	regulatory region 312356	1488 bp distal