rs48212870 SNP Detail

Summary

• ID
  rs48212870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121802329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCATAT GTATACACAT
  GTGCATGTGT GTGCCTATGT ATATGTGCAT GTGTGTGGGT GGGTGGGGGC CCTGATCCAT
  GAGGAATTTA CTCTCTGAGA AAGGTAATGT TCCTATGAAA GAAAGAGTGA ATCTCACTCC
  CAGCAAATAT TGGGACACTT GGGCTGCCAA GTAGAAAAGA AATCAAGGAG GGTCCCAGCT
  R
  AAGGGTGTGG GCCAAAATAA TACCAGACAT TTCTTCTGAA ATCCGTCTGG CTTGGCCCAG
  AAGCCAGCTG AGTCTAGTCA GAGGAATAGG GCCACCCACA CCCTGTGCTG CACCCCTGCC
  TGGCCTTCCA ACTCTGTCAG ATGGGCCTGT GGCCTTCTTT GGCCAACTGC AGTGTCTTGT
  CCCACCCAGA TATTCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61238672	NES16858069	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48212870					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61238672	NES16858069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121802329 () rs orientation: forward

Symbol	Name	Function Class
Gask1a	golgi associated kinase 1A	within coordinates