rs48213052 SNP Detail

Summary

• ID
  rs48213052
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66079941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCGGC TCCGCCCGGG
  CCCCGGTCCG CTTCGGCCTC CAGTGACCAC CCAACATCTG ACTTGTGGGC AAATCATCCC
  CTTCCGTGAT CAGCTCTGAG CCCGGTCGGG CACCACTTGC CCTGGACACA CGACCCGTCG
  CGTCATAAAG AGCCATTGGA ACAGTTTATG CTGTTGGCTG TGGTCCCAAG GAAGCACTTC
  M
  AAGTCTCTGG GTAGTCCCAC CATAAAGTGA CTCTGACCTC CAGATGCAAG AAACATCAGC
  GAGAAACCGG GATGAGGGGA GGAAAGGGTT AACTTGTCCC TTCTAATACC CAGGCTTCAA
  ATCGCTTCCT CCCAACACTT CACTTTACTC TGCATGCATT CTTTTCTGTA TGCAGCAAAG
  GATGACTCAA GGATGATTCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62850161	NES17384878	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48213052					SNP	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62850161	NES17384878	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66079941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	within coordinates
Rab31	RAB31, member RAS oncogene family	194 bp upstream
Tssr149074	transcription start site region 149074	296 bp upstream
Tssr149075	transcription start site region 149075	270 bp upstream
Tssr149076	transcription start site region 149076	251 bp upstream