rs48213754 SNP Detail

Summary

• ID
  rs48213754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC TGTGTCCTCC ACTTTGGACC
  R
  GAGCTCAGAC ATCTCTCATT TGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60991861	NES16142286	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		G	A	A	G
ss148668782	ENSMUSSNP6238710	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322132218	CHEV_7_30981535	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48213754					SNP	A	G	G	G	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991861	NES16142286	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895941 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18783	CpG island 18783	1200 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	121 bp upstream
Rr400233	regulatory region 400233	1180 bp downstream
Tssr71706	transcription start site region 71706	1485 bp upstream
Tssr71707	transcription start site region 71707	1473 bp upstream
Tssr71708	transcription start site region 71708	1426 bp upstream
Tssr71709	transcription start site region 71709	1291 bp upstream
Tssr71710	transcription start site region 71710	947 bp upstream