rs48215159 SNP Detail

Summary

• ID
  rs48215159
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:57605584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGATTT AGGATGGACA
  GGATGCAGTG TATAAGGAGG ACGGATGAAC AAAAAGAAGG ACGCTTTGCA ATTATTAAGA
  TGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AAGGGCGGGG GAGGACAGAT AGGTTGCTTA
  CACAGACTGC CAGAGTCATT CAGGATACTT TCCACTCTGT CATTTCCAGA GACTCCATGG
  W
  GCTTGACTTG AGAAAACGGG TATGTTATGT AATTTTTAAA GGCATCTTTT GACTTGAGTC
  TTGTTGCTTC AGTATTAAAA TTAGACTTTA TTTCCCAAGC AAACACAATT GAATCTGGCA
  GAGAGAGAGA GAGAGGACAG ATGCACTACA TGATGGGGAA ATCCCGCCAG GGCCAGACGC
  TGCTGTGAGT AACCATGGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60303051	NES15808642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48215159					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60303051	NES15808642	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:57605584 () rs orientation: forward

Symbol	Name	Function Class
Ctxn3	cortexin 3	within coordinates
Tssr151204	transcription start site region 151204	32 bp downstream