rs48215659 SNP Detail

Summary

• ID
  rs48215659
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24008296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT TCATGGTCGG GAGGCAGAGG
  C
  GGGCGGATCT CTGAGTTCGA GGCCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145332810	ENSMUSSNP3039449	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325327373	CHEV_17_23926289	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48215659					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24008296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	1129 bp proximal
D930048G16Rik	RIKEN cDNA D930048G16 gene	1382 bp upstream
Gm52285	predicted gene, 52285	880 bp downstream
Rr339284	regulatory region 339284	1895 bp distal
Rr339285	regulatory region 339285	304 bp proximal
Srrm2	serine/arginine repetitive matrix 2	1210 bp upstream
Tssr142954	transcription start site region 142954	1303 bp upstream
Tssr146666	transcription start site region 146666	558 bp downstream