rs48215716 SNP Detail

Summary

• ID
  rs48215716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135674518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGTTGC CAATTCTTTG
  AGCTTTGGGA TCTCAGAGGC CATGGTGGCC TTAGCTCTGA TGGCCCTGTC CCTGGCAAGA
  GAGAGAAGGG TTCTACCACT GCACTGTTAG TCATCTTGCC ACATGTACTT CTGTGTGTAG
  AGCCCCTGGA CACAGGCCCA CCACCAACCC CAATGCATCC AAGTTTGCCC AGAAGATTGG
  Y
  GGCTCTGAGC GCTGTCCCCG CTGTAGCCAG GCGGTCTATG CTGCGGAGAA GGTGATCGGT
  GCCGGGAAGG TAAGGCGCTG CAGGGCATGA GGGAGAGAAG AGGGATGTGT GCTTCCCAAA
  TGTGAATTAC AGAGCTGTGT GATGGATGAC TCTAGATCTG CTCCGGGCCT GAGACCTGCA
  CTTAGTCTCC TTCCAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60803844	NES16474136	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48215716					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803844	NES16474136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135674518 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419262	regulatory region 419262	13 bp distal
Rr419263	regulatory region 419263	879 bp proximal
Tssr222	transcription start site region 222	within coordinates