rs48216946 SNP Detail

Summary

• ID
  rs48216946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCTCCTT TTCCCTACTA
  TGATGAACTT TGGGGACCTC CTATGTAGTT AACATAGTGG GTCAGAAAGT GCTTAATTCA
  AAGTCACCAA GCCCTTGGAA CCCCCTGTCT CTGCCTCCAC TGCACAGGGT TACAGCTGCA
  CACTACCTCG CCTGGCTTTT GTTTGTTATG TTTGTTGTAT CGGTGTTTTG CTTGCATGAG
  Y
  GTCTGTGCAC TGTGCCCATG GAGGCCCAGA GAGGACATCA GAGCCGCTAA AACTGGAGTT
  ACAGACAGTT GTGAGCTCCA CATAGGTGGT GGGAAGGGAA CCTGTATCTT CTGTATGAGC
  AACACGTGCT CTTAATTGTA GAACTCTCTC TCCAACCCTC GATTTTTGTT TTGTTTCGTT
  TCATTTTGTA TTGTATTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148206260	ENSMUSSNP6564254	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48216946					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436589 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	199 bp downstream
Rr569427	regulatory region 569427	313 bp distal
Rr569428	regulatory region 569428	361 bp proximal