rs48217000 SNP Detail

Summary

• ID
  rs48217000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89737734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT TATTCAAACC ACCACAGGAA
  R
  CTCTCTTCGC TTCTCAGATT CCAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145495053	ENSMUSSNP6187892	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322769776	CHEV_8_91535005	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48217000					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89737734 () rs orientation: forward

Symbol	Name	Function Class
Rr366841	regulatory region 366841	within coordinates
Rr667276	regulatory region 667276	1833 bp proximal
Tssr78677	transcription start site region 78677	1511 bp upstream
Tssr82374	transcription start site region 82374	1344 bp downstream