rs48217019 SNP Detail

Summary

• ID
  rs48217019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43636221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCTGG CATGGCAGGA
  AGGTACTGAG AAAGAATACT TTGTAATCCT TGGGGGTTTA TTTTTATCCC TGCCTGTCTG
  CTGTGAAGGG CGCTTTGGAC TAAGATGCTC TATGATGCTC TAAGCTGCTT TTGCTGGGAT
  GTGCTGGGGC TTGCCCTGCT CTGAGAAGAG GATCTGGAAG TGCACTCTCG GGCAGCAGAC
  R
  GAGTTTATTT GCTCCAGCCA GTTTTCCAAG AGATCTTCAA ACTGTTTCTG TGAGGGACAG
  TGGAGATGGA GACATTGTCT CCCTAGGAAG TACAGAGGAG AGGAAGATGA TAGATGAACC
  CCAATCTTCC TGAACTGACT TAGATCTAGC GGTGCCTTTC ACAGGGGACA GGCTACCACC
  TCCCAGTCGC CACAGTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52256637	NES15259700	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48217019					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52256637	NES15259700	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43636221 () rs orientation: forward

Symbol	Name	Function Class
1700027J07Rik	RIKEN cDNA 1700027J07 gene	within coordinates
Rr384598	regulatory region 384598	within coordinates
Rr430868	regulatory region 430868	1585 bp distal