rs48217538 SNP Detail

Summary

• ID
  rs48217538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:16141474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAGAGAT GCATATTCCA
  GCCAGGAGAA AGGGGGTGTC TAATATTTAT GGCATTGATT TACAGTAATG TTCTCTTTAG
  ATAATCTTCC ATAAAAATGA TTGCATATCC TTTCTGTTAT GAAGCAAAAG GGTAAAAGCC
  ATCTGTGGAG CTTCGTTTAA TTGGCAGAAC GTTCCAACTG TTTAATTTTA AACATGAGAA
  R
  TCTAAGAATT CCCTTTAAGA TGCTACAAAA TCACCCAGTC TTATTAAGAA ATCGTACTTT
  CACTTATTTA TAGTTTAGTG CTTTTGAAGC TCGGCCTATT ACATAAGAAC TCGGGTGCCT
  CTCATGCATT TTGAGTCAAA TAAGTTGTGG CACATAAATG TGTACACATT TTTGGTGTTG
  TTTTAAATTG ATTTGCCAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61117959	NES16617340	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48217538					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61117959	NES16617340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:16141474 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d1	calcium channel, voltage-dependent, alpha2/delta subunit 1	within coordinates
Cpgi15553	CpG island 15553	835 bp distal
Gm3510	predicted gene 3510	834 bp upstream
Rr607526	regulatory region 607526	1555 bp distal
Rr607527	regulatory region 607527	within coordinates
Tssr1426	transcription start site region 1426	1797 bp downstream
Tssr1427	transcription start site region 1427	1576 bp downstream
Tssr45210	transcription start site region 45210	1852 bp downstream
Tssr45211	transcription start site region 45211	1780 bp downstream
Tssr45212	transcription start site region 45212	1757 bp downstream
Tssr45213	transcription start site region 45213	1730 bp downstream
Tssr45214	transcription start site region 45214	1689 bp downstream
Tssr45215	transcription start site region 45215	1550 bp downstream
Tssr45216	transcription start site region 45216	1514 bp downstream