rs48217560 SNP Detail

Summary

• ID
  rs48217560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:93255534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TTTTCCCTTG ACTTTATATT CCTCGGGTAC AACTGTATGC
  TCCGTATGAA CAGCTCTCTT CTCCTGCTAA AGCCCCCCCC CCCCCCCCCC CCCCCGCCGG
  Y
  AACATGCTGT TAAGACTGGG AAGACTATAA TGACTATAGT GTCATTGTCA CACTAAGACA
  AGTCCACTCA CTAAGAGAGG TCTGGCGATG AAAGGCCACC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134247197	ENSMUSSNP2968496	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs48217560					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:93255534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22831	CpG island 22831	562 bp proximal
Eif2s3x	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	within coordinates
Rr395367	regulatory region 395367	180 bp upstream
Rr692435	regulatory region 692435	713 bp proximal
Rr692436	regulatory region 692436	1300 bp proximal
Rr692437	regulatory region 692437	1826 bp proximal
Tssr163780	transcription start site region 163780	710 bp downstream
Tssr163781	transcription start site region 163781	757 bp downstream
Tssr163782	transcription start site region 163782	977 bp downstream