rs48218992 SNP Detail

Summary

• ID
  rs48218992
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4299189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA GAGGGAATTG CGCCCTTGCT
  V
  TGTGCTCTGT TTCAGCACCT CTGTT                                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61075432	NES16047358	PERLEGEN	MM_PANEL2	f	SNP		A	A	C	A	A	C	A	A	A	A	A	C	C
ss148556233	ENSMUSSNP494805	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48218992					SNP	G	A	A	C	A	A	C	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075432	NES16047358	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4299189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20049	CpG island 20049	78 bp proximal
Cpgi20050	CpG island 20050	1151 bp proximal
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	830 bp upstream
Map2k7	mitogen-activated protein kinase kinase 7	1292 bp downstream
Rr658999	regulatory region 658999	1586 bp proximal
Tgfbr3l	transforming growth factor, beta receptor III-like	within coordinates
Tssr76110	transcription start site region 76110	970 bp downstream
Tssr76111	transcription start site region 76111	948 bp downstream
Tssr76112	transcription start site region 76112	922 bp downstream
Tssr76113	transcription start site region 76113	268 bp upstream
Tssr76114	transcription start site region 76114	1118 bp upstream
Tssr76115	transcription start site region 76115	1244 bp upstream