rs48219119 SNP Detail

Summary

• ID
  rs48219119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:185044877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGCTACC TTAGCGCGTA
  AGTCAACAGT GCTGGTGACA ACATACGTCT AAAATAAGGA AAGAAACGCC ATCAACAGCT
  TCCTGTCTTC TCTAGGTGGC CAATGTTTCT AAATTTTATC CATTTTATGT TAAAAAATAC
  TTGTTGCCAG GAAGTGGTGG TTCACGCCTT TAATCCCAGC ACTTGGGAGG CAGAGGTAGG
  Y
  GGATTTCTGA GTTTGAGACC CGCCTGGTCT ACAGAGTGAG TTCCAGGACA GCCAGAGCTA
  TACAGAGAAA CCCTGTCTCC GAAAAAAAAA ACAAAACAAA ACTTGTTTTC ATTAACCAGG
  GACTAGATTG CCACCTAAAT TATACGGGGA TTATATTACA GATTCAGGAA ATGGCCAATG
  ATATTAACAT TAAAAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146427388	ENSMUSSNP1228072	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320174685	CHEV_1_187136559	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48219119					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185044877 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	within coordinates
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	Intron
Mir194-1	microRNA 194-1	639 bp upstream
Mir215	microRNA 215	901 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	639 bp proximal
Rr425362	regulatory region 425362	1961 bp distal
Rr425363	regulatory region 425363	483 bp distal
Tssr10600	transcription start site region 10600	480 bp downstream
Tssr10601	transcription start site region 10601	990 bp upstream