rs48220221 SNP Detail

Summary

• ID
  rs48220221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30212731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGGCAT GCCTGAGACT
  CAAGAGATCT TTAGTCCTGT GTGGTGGCAC ACTCCTGTTA TCCTAGCACT TGGGAGGCTG
  AGACAGGAGG GCCATGTGTT CCAAGCCAGC CTGGACTACA GAGTGAGAAG AAGGAAGAGG
  AGGAGTGGGA GAGGGGAGGG GAGGAGAAGT GCTAGCCTAG GGTGGTAGTG ACTTGGTAAC
  Y
  GAAGGGTAAT TAATCCTTCA ATGTGCTTAG CCAGGGATCT AGTCAAGAAT TCTTTCCCTC
  TCAGAGGATT TGTAATAAAC AACACAGGTG AATAGCAGAC ACTGATGGCC TACGACAAAT
  GACTGCTCAG AAGGGGTGGG TCATTCCTTC AGTTAATAAG CACCGATGAG CAGGCTGAGG
  AGATGTTTTG GTCAGTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60990915	NES16137441	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48220221					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990915	NES16137441	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30212731 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	1816 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	within coordinates
Tssr2186	transcription start site region 2186	1923 bp upstream
Tssr65778	transcription start site region 65778	1839 bp upstream