rs48220254 SNP Detail

Summary

• ID
  rs48220254
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10992227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCACTT GAGCAGGGAA
  AAAAAAAGTG ATTTCTAAGT TACTGATCTT AGAAGGGGTC ACTTTTCTGG GCATATTTCC
  CACAACAAAG TCCAAAACAG ATGAACAGAA AGAACTTGTT TCTGATTACA GCATCACTGA
  TACATATATG GAGAGTAGAA GAGGTCTGAT GCTCTCTAAT TAAATGTCCC CAGCTTTCCC
  W
  TTAGAGATGC TGAACATCCT AGGGCCATGT ATTAAAAAGC TTGATCACCA GGTGGCGCTC
  TCTAGAGGAG CTGGAATTCC TTTTTTTTTT TTTTTTTTTT TTAATTCCTA ACAGACTGGC
  TATGGGAGTC TTTCTTTTCT GGATTTGTAT TCATTTAGAA GAAATTACTA AGCATGTCTG
  TGAGGGCAGT TCAACAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741552	NES17678361	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	A	A	T		T	A	T		A
ss148669476	ENSMUSSNP3597684	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss324260893	CHEV_13_10941437	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48220254					SNP	A	A	T	A	T	A	A	A	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741552	NES17678361	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10992227 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	within coordinates
Rr278201	regulatory region 278201	within coordinates