rs48221532 SNP Detail

Summary

• ID
  rs48221532
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135717885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGCAAAAC TGCGCCCCCT GGTGGACAGC
  ATTTGTGATT AGGGCTTTGG GTTACCAGTT CTGTAGCTGA GTCTCAGACA AAGATAGAGG
  AGGTGGTAAA GACGCAGTTT GGGAGAGAGG GTCTGTGTTG AGAAGGAGAT GAAGGAGGGT
  S
  CTCCTCTCTC TTCTACAGCA AGAAGTGTAG CAGCCGTCTC TGCATGGAAA GAGTGGGAGC
  CCAGGGAAAG CCACCTTCAA AAGGAGTTTG GAAAACATTA TTCTTCCTGA CTGGAGTCCT
  GAAGGAACCT CATTAGGCCT GCTGACCAAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145546386	ENSMUSSNP475790	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss319993397	CHEV_1_137686724	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48221532					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135717885 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1932 bp upstream
Rr419276	regulatory region 419276	1854 bp distal
Rr419278	regulatory region 419278	997 bp distal
Rr419279	regulatory region 419279	1179 bp distal
Rr419280	regulatory region 419280	within coordinates
Rr419281	regulatory region 419281	121 bp distal
Tnni1	troponin I, skeletal, slow 1	Intron