rs48221673 SNP Detail

Summary

• ID
  rs48221673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84354811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGTAGG AGCTAAGATG
  TTGTTTCTTT TGCCTTGGAA CTAAGGAGAT CTTTATTCAG TTCTATTTGA GTAGCACTCT
  ACGTGACTAC CAAGGTTATA TCCACTTAAA GGACTGCCGG CATAGCAAGC AGAAGTAGGA
  AACAACTTTG GGAAGGAGAT GCCCAGTGAG ACGCAATACC TCCCCTACAT GCACGCAAGC
  R
  CTTCTATACG CAAACCCCGC TCTTCACGCT CATCAAATGG ATGTAGGAAA GCAAGAAAGC
  CCAGGTTCAT CATGATGGTG GAGAAGACCT ATCTTAAGAC ATAAATCCTC TAAAGATTTT
  CCACCGTCAA AGACATGTGC TACAAACATA GCTATAATTA AAGCACATGT AGATCTATCC
  AAGACATTTT TTTTTTCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60500617	NES16526867	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	G		A	G		A
ss325260811	CHEV_16_84558168	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs48221673					SNP	A	A	G	A	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500617	NES16526867	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84354811 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	359 bp upstream
Rr404934	regulatory region 404934	1734 bp upstream
Rr518505	regulatory region 518505	330 bp proximal
Rr518506	regulatory region 518506	431 bp proximal
Rr518507	regulatory region 518507	1722 bp proximal
Rr518508	regulatory region 518508	1853 bp proximal
Tssr139145	transcription start site region 139145	755 bp downstream