rs48221799 SNP Detail

Summary

• ID
  rs48221799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122296025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAGCCCC TCAGGGGACC
  TGAGTGGCCA CTCAACTTTC TCATGGCTTC CTCAAGCATA GCCACTCCAG CAGCCTTTCT
  CTCTCAACAG ATGAACTGCT GGGCGTACCC CATCTTGTCT CACACGCCTG CCTTGCTCGC
  AGTGTAACCC ACTCTTCTTT AAAGCCACAG TCGAAGAGGC ATCTCAGCCT CCTCTGTGGC
  Y
  GGATAAAATG GACAGACAAC ACAGAAGTCC TTGGTCTGCT AAGCCGGAGG TTTTGCACTC
  TGTTACCTGA TTGAAGAAAT ACGATGGGTT TGGTTTCATT CTTGCCGAGG TGATTGTAGT
  CGTGAACCTC ACGTTAGGCT TCTCCTCAGG TCACAGTCTC ACAGAGCCAA TCAAGGCAGA
  TTAATCAAAG TGGTTCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52524806	NES15586797	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48221799					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52524806	NES15586797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122296025 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	549 bp upstream
Gm63496	predicted gene, 63496	1336 bp downstream
Rr498317	regulatory region 498317	560 bp distal
Rr498318	regulatory region 498318	239 bp distal
Tssr127312	transcription start site region 127312	247 bp downstream
Tssr130315	transcription start site region 130315	530 bp upstream