rs48223807 SNP Detail

Summary

• ID
  rs48223807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30332543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCAGGC CACTGTCCCC
  ATTCCTGAAT GGGGCCCTGG AAGCATTTGA GCCTGTGATC CTTAGGCAAT TACAGAACAG
  CTGTACATGC CAGGGACCTC TGCACTCAGT GTTAGCAGCT GCCCTCTTGT CTCACTAGGC
  CCATGAAGCA CCTCTTGAAT CTTTGTTGAT TTTGCTGATA CACACCCAGG CAGAGAGGCA
  Y
  GGCCAAACTG AGTCCTGTTT TATCAGCTAA AGGTCCCCAT CCTGTAGATG GGGAAACTGA
  GACTCAGAAG GAGCCAGAAC CGAAAGCTAG AGTTATATAA CTCTGCCCCA ACTTGTCAAC
  ATACCCCACA CTTCTGACCA AGAGCCCCTC AGGGTCACAT GCCTCCTGCC TCAGGGTCAC
  ATGCCTCCTG CCTCTTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709010	NES15548833	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48223807					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709010	NES15548833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30332543 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	1039 bp downstream
Prkcd	protein kinase C, delta	within coordinates
Rr288069	regulatory region 288069	1258 bp proximal
Rr292185	regulatory region 292185	943 bp distal
Tssr127876	transcription start site region 127876	1409 bp upstream