rs48224239 SNP Detail

Summary

• ID
  rs48224239
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88203447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GGTTTTAGCA AGGACACACC
  A
  TTTCGTATTT GCAACCCGTG TGGCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss144900145	ENSMUSSNP5945423	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs48224239					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88203447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	1155 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	1646 bp distal
Rr29783	regulatory region 29783	within coordinates
Tssr12871	transcription start site region 12871	1586 bp upstream
Tssr12872	transcription start site region 12872	1541 bp upstream
Tssr12873	transcription start site region 12873	1539 bp downstream
Tssr12874	transcription start site region 12874	1745 bp downstream
Tssr12875	transcription start site region 12875	1785 bp downstream