rs48225538 SNP Detail

Summary

• ID
  rs48225538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97447445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGGTCA GCATAGTAAT
  AGCTGTCTCT TGATCATAGT GGCGCTTTAG GGAGTCTGCA AGTCCTAGAT AGGAGGACCA
  GATCATCGAC ACTTGCTGTG TAGAGGGGAA AGTTTTCTTT TTCTCCCAAT ATTCAGACAT
  GCAAGGAGAT CTCATTCCTG GGGTAACTGT ACTAATGAGT AGAAGAGGAT TTAGCAAGCT
  Y
  AGGTCTCACT GAATTGAAGC CTCTGTGATC CATGCTCCAT GTTAGGTGGT GATAAATTCT
  ACATAGAATT CTAATAAGAT AAAATGCCCC CCTTTTTACT CAAATTGAGT AAAGGGAGAT
  ATCATTGAGT ACCTATGTTA TACAAGGTAG CTGTGAGCTA GACAAGCTTG GACATATATC
  CAAATACTGA TTGTTTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms
ss61682493	NES17633319	PERLEGEN	MM_PANEL2	f	SNP			T		C	T
ss137979976	ENSMUSSNP6392485	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms
rs48225538					SNP	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61682493	NES17633319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97447445 () rs orientation: forward

Symbol	Name	Function Class
Rr387670	regulatory region 387670	561 bp downstream