rs48225786 SNP Detail

Summary

• ID
  rs48225786
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32396930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCACTCAG AATGATAATC
  TACATGAGAT TGCAGCATTT TCAGACCAGG ATCCACTGCT GGGGAGGGAA CACTGTGGCC
  AGACCATGTT ACAGTAGAAC ACAAGATATT AGGACTTCAT AGAGCCTTTT GGTTCTGGGC
  TGATAAACTT GTGAAGAGAC ACGGCAGAAG AGAGCGTCTA GGCATTTCAG AGGAGTGCCG
  S
  TCTATGGCTG TGTTGAGGAG AAGAAGGCTG GATTTCTTCC AAACAGAAAG GAGCTACCTG
  TTGCCTAGTG CCTATGCTGA GTGAGTAGCC AGAGAAGGAA GATCCCACTG GCTCCTCCAA
  GGGGGACAGA CAGGAAAGGG CACACAGGAC ATAGCGGGAA CCCTGGGTCA GGGTTTCTGA
  GGAGTCAATC TCATGGATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63735634	NES17079938	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48225786					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63735634	NES17079938	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32396930 () rs orientation: forward

Symbol	Name	Function Class
Gm60756	predicted gene, 60756	within coordinates
Rr317723	regulatory region 317723	71 bp proximal
Rr391588	regulatory region 391588	273 bp upstream