rs48226221 SNP Detail

Summary

• ID
  rs48226221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAACTGA AGTTTGACCG
  GCCTTTCCAT ATGGAGATGT CCTTGCTGAA GGCCATGCCA TTCTCCCAAG CGGCAGGTAA
  GTTTAAAGAC TCAAAGATGC ATCTTCCTCA CTGTTGGAGA ACACAGAAGT GATCTATGTA
  CTGATAGATA GATAAGCTAG ACCCAAGGAT GTAGAAAGAA CAGGATGACA TAGTGACCAT
  Y
  AAAGTCTCTT TATACAGACA TCTGCTTTCT ACCTGTTCCT TCATATCAAT TCTCATGAGC
  AAGACAGATG TGCAAGACAG ATGTGAAAAG GAGAATCCCT TTCTTCTTGT TGCATTTGTT
  AGAGAATTGA TCTGTACAGT CTAAAAAGAG GTCTTTCAGG TTATGGCAAG ACCATCAGAC
  AATGCTGTGG ACTTTTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60936903	NES16189353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48226221					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936903	NES16189353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260140 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	401 bp downstream
Tssr58809	transcription start site region 58809	211 bp upstream
Tssr58810	transcription start site region 58810	237 bp upstream
Tssr58811	transcription start site region 58811	273 bp upstream
Tssr63019	transcription start site region 63019	1609 bp upstream
Tssr63020	transcription start site region 63020	677 bp upstream
Tssr63021	transcription start site region 63021	599 bp upstream
Tssr63022	transcription start site region 63022	560 bp upstream
Tssr63023	transcription start site region 63023	505 bp upstream
Tssr63024	transcription start site region 63024	407 bp upstream
Tssr63025	transcription start site region 63025	375 bp upstream
Tssr63026	transcription start site region 63026	354 bp upstream
Tssr63027	transcription start site region 63027	316 bp upstream
Tssr63028	transcription start site region 63028	291 bp upstream
Tssr63029	transcription start site region 63029	263 bp upstream
Tssr63030	transcription start site region 63030	207 bp upstream
Tssr63031	transcription start site region 63031	177 bp upstream
Tssr63032	transcription start site region 63032	146 bp upstream
Tssr63033	transcription start site region 63033	132 bp upstream
Tssr63034	transcription start site region 63034	106 bp upstream
Tssr63035	transcription start site region 63035	91 bp upstream
Tssr63036	transcription start site region 63036	24 bp upstream
Tssr63037	transcription start site region 63037	within coordinates
Tssr63038	transcription start site region 63038	18 bp downstream
Tssr63039	transcription start site region 63039	77 bp downstream
Tssr63040	transcription start site region 63040	135 bp downstream
Tssr63041	transcription start site region 63041	184 bp downstream
Tssr63042	transcription start site region 63042	209 bp downstream
Tssr63043	transcription start site region 63043	219 bp downstream
Tssr63044	transcription start site region 63044	241 bp downstream
Tssr63045	transcription start site region 63045	332 bp downstream
Tssr63046	transcription start site region 63046	351 bp downstream
Tssr63047	transcription start site region 63047	374 bp downstream
Tssr63048	transcription start site region 63048	402 bp downstream
Tssr63049	transcription start site region 63049	417 bp downstream
Tssr63050	transcription start site region 63050	441 bp downstream
Tssr63051	transcription start site region 63051	493 bp downstream