rs48227287 SNP Detail

Summary

• ID
  rs48227287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11448552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATGTAT ATCCTAACAT
  GTAGTAAATG CTGTGTGAGT CCACGTTTGG GAGGAGTCTG CTAGGAGGCA GCAGTCTGGC
  CAAGTGAGGC TGCTTGCCCA GGGGTCTTCC TGAAGCGTTC AGGGACAGCA TTTCAGAACA
  CCCTCTCATG GTTCACTGAA TTGCATACTT GAGTGGCCTT GCATTGGCTA CAAACGACTT
  Y
  ATAGCACTTC TATCTTTGCT TCTTTGGGAA CCAGCCAAAT ATGTTGAATA ATTGAGTTTG
  GAAGCTTCTA TGGCTCAAGC TTGACCAGCT GCATGTGGGG TTGGTGTAGT TTTAGAGCAC
  CCAGCCAGGG CTCTAATCTT CCCTCCAGGA ACCAATTACA CGGCCTGGAA CAGGCTCTCG
  AAGCTCCTGA GTTCAGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52596365	NES15695671	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48227287					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52596365	NES15695671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11448552 () rs orientation: forward

Symbol	Name	Function Class
Gm59955	predicted gene, 59955	1378 bp downstream
Rr511811	regulatory region 511811	within coordinates
Snx29	sorting nexin 29	Intron
Tssr137107	transcription start site region 137107	1393 bp upstream