rs48227294 SNP Detail

Summary

• ID
  rs48227294
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17837939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAATATGTGA AAGATCAGCT GCATTTAGTA CCTCCTGTCT
  ACAAATAGAA ATATCTACAC AAATGCAAAA CACATTGCTC TGCGAAAATT AGGATGTCAA
  A
  CCAATTGCCA AAAGTTAAAA ATATAACCAA AAAAGCCATG TCCTACATAC TAGTGTTTAT
  AATGATTGTA TTCTACATCC AAAATATTAT TTTTCTGAAT C                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134653755	ENSMUSSNP6551432	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48227294					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17837939 () rs orientation: forward

Symbol	Name	Function Class
Gm10742	predicted gene 10742	within coordinates
Gm56811	predicted gene, 56811	within coordinates
Gm65999	predicted gene, 65999	within coordinates
Rr573837	regulatory region 573837	223 bp proximal
Rr573838	regulatory region 573838	932 bp proximal
Rr573839	regulatory region 573839	1827 bp proximal
Tssr32672	transcription start site region 32672	1530 bp downstream
Tssr32673	transcription start site region 32673	1751 bp downstream
Tssr32674	transcription start site region 32674	1793 bp downstream
Tssr32675	transcription start site region 32675	1832 bp downstream